STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26975Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology (271 aa)    
Predicted Functional Partners:
CN09_27010
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.996
CN09_26970
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.995
CN09_26980
Flagellar biosynthesis protein FliQ; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.995
ssaR
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.991
CN09_26990
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.980
CN09_27000
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.972
CN09_26960
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.964
CN09_26995
ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.963
CN09_22160
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.916
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
 
   
 0.857
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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