CN09_27020 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_27020

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)

Predicted Functional Partners:

CN09_27015

0.676

CN09_27010

0.675

CN09_27005

0.675

CN09_27000

0.675

CN09_26995

0.674

CN09_26990

0.674

ssaR

0.674

CN09_26980

0.674

CN09_26975

0.674

CN09_26970

0.667

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_26970	CN09_26975	CN09_26970	CN09_26975	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_26970	CN09_26980	CN09_26970	CN09_26980	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Flagellar biosynthesis protein FliQ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.993
CN09_26970	CN09_26990	CN09_26970	CN09_26990	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_26970	CN09_26995	CN09_26970	CN09_26995	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method- Protein Homology	0.986
CN09_26970	CN09_27000	CN09_26970	CN09_27000	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_26970	CN09_27005	CN09_26970	CN09_27005	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.888
CN09_26970	CN09_27010	CN09_26970	CN09_27010	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_26970	CN09_27015	CN09_26970	CN09_27015	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_26970	CN09_27020	CN09_26970	CN09_27020	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.667
CN09_26970	ssaR	CN09_26970	CN09_26985	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_26975	CN09_26970	CN09_26975	CN09_26970	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_26975	CN09_26980	CN09_26975	CN09_26980	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Flagellar biosynthesis protein FliQ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_26975	CN09_26990	CN09_26975	CN09_26990	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.980
CN09_26975	CN09_26995	CN09_26975	CN09_26995	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method- Protein Homology	0.963
CN09_26975	CN09_27000	CN09_26975	CN09_27000	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.972
CN09_26975	CN09_27005	CN09_26975	CN09_27005	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_26975	CN09_27010	CN09_26975	CN09_27010	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_26975	CN09_27015	CN09_26975	CN09_27015	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_26975	CN09_27020	CN09_26975	CN09_27020	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.674
CN09_26975	ssaR	CN09_26975	CN09_26985	Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991

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