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CN09_27325 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27325" - Multi antimicrobial extrusion protein MatE in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_27325Multi antimicrobial extrusion protein MatE; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)    
Predicted Functional Partners:
CN09_27330
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (423 aa)
     
  0.990
CN09_10235
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
 
     
  0.823
CN09_10210
Cellulose biosynthesis protein CelD; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
 
     
  0.773
CN09_16805
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
     
  0.772
CN09_10215
Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology (721 aa)
 
     
  0.769
CN09_10225
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
   
  0.753
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.700
CN09_05655
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)
              0.672
CN09_27440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
   
          0.663
CN09_01855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (500 aa)
 
          0.662
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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