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CN09_27360 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27360" - 3-demethylubiquinone-9 3-methyltransferase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_273603-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)    
Predicted Functional Partners:
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
   
 
  0.801
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
 
  0.712
CN09_12660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
 
          0.705
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
 
 
 
  0.663
CN09_02830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
   
          0.659
CN09_12145
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
        0.602
CN09_05135
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
 
 
  0.600
CN09_04750
Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1258 aa)
         
  0.587
CN09_28665
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
     
  0.586
CN09_03210
Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
   
   
  0.580
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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