CN09_27490 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_27490

MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (119 aa)

Predicted Functional Partners:

CN09_01825

0.815

CN09_11925

0.749

CN09_09860

0.731

ispDF

0.727

CN09_06090

0.711

CN09_14570

0.704

CN09_11810

0.698

CN09_26870

0.677

CN09_15095

0.668

CN09_33125

0.664

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01825	CN09_09860	CN09_01825	CN09_09860	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	0.433
CN09_01825	CN09_11810	CN09_01825	CN09_11810	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.842
CN09_01825	CN09_14570	CN09_01825	CN09_14570	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.867
CN09_01825	CN09_27490	CN09_01825	CN09_27490	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.815
CN09_01825	CN09_33125	CN09_01825	CN09_33125	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.842
CN09_06090	CN09_09860	CN09_06090	CN09_09860	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_06090	CN09_14570	CN09_06090	CN09_14570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.463
CN09_06090	CN09_27490	CN09_06090	CN09_27490	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.711
CN09_09860	CN09_01825	CN09_09860	CN09_01825	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.433
CN09_09860	CN09_06090	CN09_09860	CN09_06090	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_09860	CN09_11810	CN09_09860	CN09_11810	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.912
CN09_09860	CN09_11925	CN09_09860	CN09_11925	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.973
CN09_09860	CN09_14570	CN09_09860	CN09_14570	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.801
CN09_09860	CN09_15095	CN09_09860	CN09_15095	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778
CN09_09860	CN09_27490	CN09_09860	CN09_27490	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.731
CN09_09860	CN09_33125	CN09_09860	CN09_33125	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.698
CN09_11810	CN09_01825	CN09_11810	CN09_01825	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.842
CN09_11810	CN09_09860	CN09_11810	CN09_09860	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	0.912
CN09_11810	CN09_14570	CN09_11810	CN09_14570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.582
CN09_11810	CN09_15095	CN09_11810	CN09_15095	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.411

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About