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CN09_27570 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27570" - Glycoside hydrolase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_27570Glycoside hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 13 family (386 aa)    
Predicted Functional Partners:
CN09_25840
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
              0.999
CN09_02265
Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (869 aa)
              0.999
CN09_00785
Triostin synthetase I; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
   
   
  0.744
CN09_00800
Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method- Protein Homology (81 aa)
   
   
  0.726
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (467 aa)
              0.605
CN09_07095
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane (142 aa)
              0.605
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid (256 aa)
              0.550
CN09_27565
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
              0.531
CN09_27740
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1394 aa)
 
 
 
  0.527
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
     
  0.501
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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