STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27600Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology (632 aa)    
Predicted Functional Partners:
CN09_27605
Cobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.988
CN09_27610
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.888
CN09_27595
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.886
CN09_27615
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BolA/IbaG family
       0.809
CN09_05150
X-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
cysS
Cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family
       0.744
CN09_04310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.738
CN09_29070
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.730
CN09_23200
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.729
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
  
     0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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