STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27615Hypothetical protein; Belongs to the BolA/IbaG family (95 aa)    
Predicted Functional Partners:
CN09_27610
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.893
CN09_27605
Cobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.824
CN09_27600
Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.821
CN09_27595
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.806
CN09_24065
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.770
grxD
Belongs to the glutaredoxin family. Monothiol subfamily
 
 
 0.758
CN09_27300
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.702
CN09_17845
Dna-binding protein; Belongs to the Dps family
   
    0.692
CN09_01480
Hypothetical protein; Belongs to the UPF0176 family
  
    0.668
msrB
Peptide methionine sulfoxide reductase MsrB; This stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.648
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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