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CN09_27635 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27635" - Signal peptide protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27635Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (55 aa)    
Predicted Functional Partners:
xerD
Tyrosine recombinase XerD; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.949
accA
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA (317 aa)
              0.878
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) (377 aa)
              0.865
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family (196 aa)
              0.844
CN09_27620
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
              0.823
CN09_11890
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
   
          0.618
CN09_12205
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
   
          0.598
CN09_27440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
   
          0.583
CN09_27650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (434 aa)
 
          0.549
CN09_04150
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.510
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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