STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27740Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (1394 aa)    
Predicted Functional Partners:
CN09_27735
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.997
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.969
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
 
 
 
 0.938
CN09_06350
Organic solvent ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.821
CN09_27705
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.792
CN09_07195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.767
CN09_21195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.767
ate
Putative arginyl-tRNA--protein transferase; May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate
  
    0.751
CN09_02385
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.732
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.731
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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