STRINGSTRING
CN09_27750 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27750" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27750Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)    
Predicted Functional Partners:
CN09_27755
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
         
  0.847
CN09_00360
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
 
 
  0.805
CN09_26095
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
 
 
  0.783
CN09_27575
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
              0.652
CN09_25275
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
   
          0.608
CN09_14830
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
          0.604
CN09_27760
Arginase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (311 aa)
              0.594
CN09_27745
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
              0.589
rocD
Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (400 aa)
              0.556
CN09_04555
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
   
          0.538
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (13%) [HD]