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CN09_27810 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27810" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27810Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (115 aa)    
Predicted Functional Partners:
CN09_27815
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
              0.625
CN09_12325
Methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
              0.582
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine (494 aa)
              0.580
CN09_27805
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
              0.545
CN09_17315
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
   
          0.537
CN09_27820
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
              0.435
CN09_08605
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (159 aa)
   
          0.434
CN09_27795
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (518 aa)
              0.403
CN09_27800
Catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; Derived by automated computational analysis using gene prediction method- Protein Homology (159 aa)
              0.403
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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