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CN09_27845 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_27845" - Acyltransferase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_27845Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)    
Predicted Functional Partners:
CN09_13610
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (411 aa)
 
          0.764
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
              0.715
CN09_28785
Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)
 
     
  0.711
CN09_32480
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
   
          0.708
CN09_20090
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
   
          0.707
CN09_09025
Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.707
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
     
  0.675
CN09_15710
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
 
     
  0.651
CN09_13620
Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (556 aa)
 
     
  0.645
CN09_16135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.634
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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