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CN09_28045 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28045" - Uncharacterized protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_28045Uncharacterized protein; Unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method- Protein Homology (97 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.999
CN09_28040
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (143 aa)
              0.963
CN09_28035
50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
              0.938
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
         
  0.934
tsaD
tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family (365 aa)
              0.928
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps; Belongs to the HMBS family (309 aa)
              0.870
CN09_28075
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (532 aa)
              0.830
CN09_28065
Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.822
CN09_29445
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
              0.744
CN09_08305
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves (229 aa)
 
        0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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