STRINGSTRING
CN09_28165 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28165" - Signal peptide protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28165Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)    
Predicted Functional Partners:
CN09_09700
Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method- Protein Homology (146 aa)
   
          0.726
CN09_28075
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (532 aa)
   
          0.721
CN09_10335
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.702
CN09_10675
Molecular chaperone SurA; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
   
          0.662
CN09_27485
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (919 aa)
   
          0.653
CN09_17665
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
   
          0.633
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (791 aa)
   
          0.630
CN09_02050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (209 aa)
   
          0.617
CN09_02005
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
   
          0.612
CN09_05000
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)
   
          0.609
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]