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CN09_28195 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28195" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_28195ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (236 aa)    
Predicted Functional Partners:
CN09_28200
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (848 aa)
 
        0.985
CN09_28190
Acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
 
        0.935
CN09_28185
RNA 2’,3’-cyclic phosphodiesterase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (198 aa)
              0.850
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] (521 aa)
   
        0.654
CN09_28205
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the BI1 family (247 aa)
              0.642
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components (505 aa)
 
          0.642
CN09_10895
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SOS response-associated peptidase family (254 aa)
              0.628
CN09_09020
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family (302 aa)
              0.619
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (132 aa)
   
          0.546
eno
Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family (424 aa)
 
          0.544
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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