STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28200Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology (848 aa)    
Predicted Functional Partners:
CN09_28195
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.985
CN09_28190
Acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.974
CN09_28185
RNA 2',3'-cyclic phosphodiesterase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
       0.850
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
     
 0.752
CN09_28205
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family
 
     0.691
CN09_10895
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family
 
     0.671
CN09_03305
Globin; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_05655
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_06085
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid
       0.597
CN09_01180
CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.569
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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