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CN09_28205 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28205" - Membrane protein in Agrobacterium rhizogenes
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_28205Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the BI1 family (247 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.984
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (367 aa)
         
  0.982
CN09_28200
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (848 aa)
 
          0.691
CN09_28210
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
              0.648
CN09_28190
Acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
 
          0.645
CN09_28195
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (236 aa)
              0.642
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
   
   
  0.604
yidC
Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins (600 aa)
 
          0.531
CN09_28185
RNA 2’,3’-cyclic phosphodiesterase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (198 aa)
              0.522
CN09_09920
Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
   
          0.483
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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