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CN09_28220 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28220" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28220Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)    
Predicted Functional Partners:
CN09_28225
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
          0.866
CN09_07500
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
 
          0.827
CN09_28270
Probable intracellular septation protein A; Involved in cell division; probably involved in intracellular septation (224 aa)
 
          0.823
CN09_10500
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DnaA family (237 aa)
              0.697
CN09_17430
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
   
          0.685
CN09_20025
UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family (157 aa)
   
          0.681
CN09_09835
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)
   
          0.665
CN09_29405
Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (1053 aa)
   
          0.643
CN09_20015
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)
   
          0.637
CN09_17420
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (435 aa)
   
          0.625
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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