STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28415Belongs to the LysR transcriptional regulatory family (298 aa)    
Predicted Functional Partners:
CN09_28420
NADPH-dependent F420 reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_18425
Hypothetical protein; Belongs to the LysR transcriptional regulatory family
  
     0.577
CN09_12345
Belongs to the LysR transcriptional regulatory family
  
     0.540
CN09_21550
Belongs to the LysR transcriptional regulatory family
  
     0.531
CN09_19030
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.515
CN09_28425
Ester cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.511
CN09_22450
Belongs to the LysR transcriptional regulatory family
  
     0.483
gltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.468
CN09_20895
Belongs to the LysR transcriptional regulatory family
  
     0.454
CN09_21695
Belongs to the LysR transcriptional regulatory family
  
     0.412
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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