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CN09_28425 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28425" - Ester cyclase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_28425Ester cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)    
Predicted Functional Partners:
CN09_28420
NADPH-dependent F420 reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)
 
          0.786
CN09_28415
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
              0.511
CN09_02855
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)
 
          0.442
CN09_02860
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
 
          0.439
CN09_27705
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
   
          0.426
CN09_21130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
 
          0.415
CN09_18080
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
 
          0.413
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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