STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28435Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (182 aa)    
Predicted Functional Partners:
CN09_28440
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.907
CN09_28445
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.831
CN09_13550
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.767
CN09_28450
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family
       0.652
CN09_28455
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
 
     0.631
CN09_04100
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.605
CN09_04105
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.596
CN09_27485
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.593
CN09_26315
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.569
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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