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CN09_28515 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28515" - DNA-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28515DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)    
Predicted Functional Partners:
CN09_28510
Thioredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (325 aa)
 
          0.876
CN09_28500
UPF0434 protein CN09_28500; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0434 family (62 aa)
 
          0.832
CN09_28505
Peptidase S16; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
              0.809
CN09_06210
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (124 aa)
 
          0.807
CN09_06940
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (277 aa)
              0.708
CN09_07015
Serine dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (468 aa)
              0.704
CN09_10330
Ubiquinol-cytochrome C chaperone; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
          0.625
pyrF
Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily (230 aa)
              0.599
CN09_04130
Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (418 aa)
 
          0.584
CN09_07180
Sulfurtransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (131 aa)
              0.580
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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