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CN09_28550 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28550" - Alpha-L-rhamnosidase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28550Alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (778 aa)    
Predicted Functional Partners:
CN09_28545
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
 
          0.971
CN09_01695
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (820 aa)
   
   
  0.867
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily (735 aa)
   
   
  0.863
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
   
      0.858
CN09_28535
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
          0.839
CN09_17630
Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
     
        0.772
CN09_15595
Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
     
        0.772
CN09_28540
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
 
          0.763
CN09_28555
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
     
  0.746
CN09_00380
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (1008 aa)
 
        0.709
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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