CN09_28605 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_28605

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (83 aa)

Predicted Functional Partners:

CN09_28600

0.703

CN09_28610

0.657

CN09_28595

0.470

CN09_28620

0.411

CN09_28615

0.411

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_28595	CN09_28600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.578
CN09_28595	CN09_28605	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.470
CN09_28600	CN09_28595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.578
CN09_28600	CN09_28605	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.703
CN09_28600	CN09_28610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.553
CN09_28605	CN09_28595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.470
CN09_28605	CN09_28600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.703
CN09_28605	CN09_28610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.657
CN09_28605	CN09_28615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.411
CN09_28605	CN09_28620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Derived by automated computational analysis using gene prediction method- Protein Homology	0.411
CN09_28610	CN09_28600	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.553
CN09_28610	CN09_28605	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.657
CN09_28610	CN09_28615	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.886
CN09_28610	CN09_28620	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- Protein Homology	0.871
CN09_28615	CN09_28605	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.411
CN09_28615	CN09_28610	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.886
CN09_28615	CN09_28620	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- Protein Homology	0.980
CN09_28620	CN09_28605	Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.411
CN09_28620	CN09_28610	Derived by automated computational analysis using gene prediction method- Protein Homology	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.871
CN09_28620	CN09_28615	Derived by automated computational analysis using gene prediction method- Protein Homology	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.980