STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28635ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (213 aa)    
Predicted Functional Partners:
CN09_01510
Nickel/cobalt efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family
   
 0.961
CN09_05930
Zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.750
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
       0.716
CN09_05945
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family
 
     0.573
CN09_16990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.534
CN09_17760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.502
CN09_28630
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.498
CN09_10415
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.497
CN09_07505
Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.486
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.483
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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