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CN09_28660 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28660" - Carboxylesterase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_28660Carboxylesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)    
Predicted Functional Partners:
CN09_28655
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
          0.988
CN09_28675
Arginase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
     
  0.988
CN09_28680
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (473 aa)
 
          0.986
CN09_28670
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
 
          0.985
CN09_28685
Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
          0.977
CN09_28665
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
          0.977
CN09_28650
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
 
          0.975
CN09_28645
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
              0.851
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
 
          0.846
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
              0.768
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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