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CN09_28690 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28690" - Histidine kinase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28690Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)    
Predicted Functional Partners:
CN09_28695
Regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
  0.969
CN09_11865
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
  0.914
CN09_28650
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
 
     
  0.869
CN09_28665
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
     
  0.852
CN09_28655
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
          0.843
CN09_28675
Arginase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
     
  0.833
CN09_20110
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
 
  0.817
CN09_28670
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
 
     
  0.813
CN09_03455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (136 aa)
 
 
  0.782
CN09_03450
Sulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology (585 aa)
 
 
  0.777
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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