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CN09_28705 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28705" - MFS transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28705MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)    
Predicted Functional Partners:
CN09_28700
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)
 
          0.868
CN09_28710
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
          0.811
CN09_29845
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
 
     
  0.574
CN09_24260
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (438 aa)
 
 
 
  0.552
CN09_30335
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
 
 
  0.537
CN09_27090
2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
              0.517
CN09_30375
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (428 aa)
 
 
 
  0.510
CN09_24830
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (435 aa)
 
 
 
  0.489
CN09_28715
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
   
 
  0.484
CN09_28690
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
     
 
  0.453
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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