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CN09_28730 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28730" - Transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28730Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)    
Predicted Functional Partners:
CN09_28725
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
 
        0.967
CN09_28735
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
              0.627
CN09_28740
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
         
  0.625
CN09_05440
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
              0.614
CN09_08465
Ala-tRNA(Pro) hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
              0.441
CN09_04875
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
              0.410
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
   
  0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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