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CN09_28735 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28735" - 50S ribosomal protein L21 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_2873550S ribosomal protein L21; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)    
Predicted Functional Partners:
CN09_28740
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
 
     
  0.965
CN09_32835
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
          0.794
CN09_32830
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
 
          0.789
CN09_32840
Pyridoxamine 5’-phosphate oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
          0.788
CN09_32560
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
              0.744
CN09_32555
Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
              0.740
CN09_28730
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
              0.627
CN09_32605
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
              0.574
CN09_02330
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
              0.556
CN09_21390
Radical SAM protein; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
 
          0.534
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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