STRINGSTRING
CN09_28745 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28745" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28745Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (441 aa)    
Predicted Functional Partners:
CN09_30445
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (361 aa)
              0.717
CN09_07225
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
          0.668
CN09_29270
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (619 aa)
              0.652
CN09_28740
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
              0.533
CN09_28735
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
              0.531
CN09_27960
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
   
          0.509
CN09_07255
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (93 aa)
   
          0.430
CN09_29580
Protein ndvB; Derived by automated computational analysis using gene prediction method- Protein Homology (2836 aa)
 
          0.410
CN09_01675
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method- Protein Homology (542 aa)
              0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]