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CN09_28785 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28785" - Sugar transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28785Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)    
Predicted Functional Partners:
CN09_28790
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (596 aa)
     
  0.986
CN09_13610
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (411 aa)
 
     
  0.814
CN09_28775
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
   
  0.794
CN09_28800
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
     
  0.744
CN09_27845
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
     
  0.711
CN09_28780
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)
 
     
  0.702
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.700
CN09_28795
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
     
  0.700
CN09_13615
Cellulase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family (359 aa)
 
     
  0.682
CN09_14780
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
   
          0.635
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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