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CN09_28830 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28830" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_28830Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)    
Predicted Functional Partners:
CN09_28850
Antibiotic resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.855
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (259 aa)
 
          0.687
CN09_16235
HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
          0.665
CN09_27555
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
          0.664
CN09_04330
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
     
  0.640
CN09_10645
DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
 
          0.628
CN09_17775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
   
          0.608
CN09_11025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
          0.556
CN09_16435
ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family (197 aa)
 
          0.543
CN09_07975
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
   
          0.527
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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