STRINGSTRING
CN09_28850 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28850" - Antibiotic resistance protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28850Antibiotic resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)    
Predicted Functional Partners:
CN09_28845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (396 aa)
     
  0.975
CN09_28835
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (649 aa)
 
     
  0.908
CN09_00915
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (652 aa)
 
     
  0.886
CN09_28830
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
              0.855
CN09_00935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
     
  0.846
CN09_28855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
              0.642
CN09_25935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1008 aa)
 
     
  0.621
CN09_21975
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (736 aa)
 
     
  0.544
CN09_23765
Calmodulin; Derived by automated computational analysis using gene prediction method- Protein Homology (116 aa)
   
          0.472
CN09_00920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (72 aa)
 
          0.442
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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