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CN09_28860 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28860" - TetR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28860TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)    
Predicted Functional Partners:
CN09_28865
Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (438 aa)
 
     
  0.729
CN09_28870
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (1043 aa)
         
  0.628
CN09_09025
Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.528
CN09_04630
Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
 
     
  0.461
CN09_34570
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
          0.433
CN09_17200
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
 
          0.433
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
     
  0.417
CN09_07450
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
   
          0.417
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
   
     
  0.411
CN09_20090
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
   
          0.402
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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