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CN09_28890 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28890" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28890Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)    
Predicted Functional Partners:
CN09_28895
Copper ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (832 aa)
              0.570
CN09_28900
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
              0.561
CN09_28880
Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1039 aa)
              0.467
CN09_28885
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (491 aa)
              0.467
CN09_28875
Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1035 aa)
              0.467
CN09_07660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
          0.441
repA
Putative replication protein A; This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number (404 aa)
 
     
  0.425
CN09_01945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
          0.419
CN09_29755
Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (385 aa)
 
          0.407
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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