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CN09_28900 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28900" - Transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_28900Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)    
Predicted Functional Partners:
CN09_28895
Copper ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (832 aa)
     
  0.972
CN09_08615
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (762 aa)
     
  0.866
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
 
     
  0.863
CN09_11080
Arsenic transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)
         
  0.663
CN09_16170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
 
          0.649
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
         
  0.648
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.566
CN09_28890
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
              0.561
CN09_28905
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (246 aa)
     
 
  0.542
moaC
Cyclic pyranopterin monophosphate synthase; Catalyzes the conversion of (8S)-3’,8-cyclo-7,8- dihydroguanosine 5’-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family (164 aa)
         
  0.491
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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