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CN09_29040 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29040" - Antitoxin in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29040Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module (100 aa)    
Predicted Functional Partners:
CN09_29045
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (155 aa)
 
     
  0.988
CN09_14740
Recombinase; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
 
     
  0.826
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
              0.700
CN09_29035
Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
              0.644
CN09_22280
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)
 
     
  0.621
CN09_27540
RelE toxin; Derived by automated computational analysis using gene prediction method- Protein Homology (93 aa)
 
 
 
  0.591
CN09_25430
Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
   
          0.571
CN09_16530
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
 
     
  0.568
glyQ
Glycine--tRNA ligase alpha subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.539
CN09_14365
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)
 
          0.538
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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