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CN09_29065 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29065" - TetR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
CN09_29065TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)    
Predicted Functional Partners:
CN09_29070
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
              0.636
CN09_29060
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (155 aa)
         
  0.563
CN09_29050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (762 aa)
              0.543
CN09_02240
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (272 aa)
 
     
  0.526
CN09_02805
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
 
 
 
  0.521
CN09_29055
FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
              0.513
CN09_05840
Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)
 
     
  0.476
CN09_14045
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
     
  0.472
CN09_30360
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
     
  0.450
CN09_15755
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
 
          0.449
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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