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CN09_29080 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29080" - Thiamine ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_29080Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)    
Predicted Functional Partners:
CN09_29085
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
  0.980
CN09_29075
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (356 aa)
 
  0.941
CN09_29090
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
 
 
 
  0.918
CN09_25080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
  0.845
CN09_03330
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
  0.837
CN09_23460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
  0.815
CN09_26180
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
  0.814
CN09_21440
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
  0.814
CN09_19870
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
  0.809
CN09_18345
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
  0.809
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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