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CN09_29090 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29090" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29090ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)    
Predicted Functional Partners:
CN09_29080
Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
 
 
  0.918
CN09_29085
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
 
  0.913
CN09_29105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
          0.830
CN09_29095
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
     
  0.824
CN09_29100
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
 
     
  0.790
CN09_29075
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (356 aa)
     
 
  0.689
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
     
  0.608
CN09_29155
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (431 aa)
   
          0.551
CN09_29205
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (322 aa)
 
 
  0.511
CN09_22605
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
   
          0.500
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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