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CN09_29105 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29105" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29105Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)    
Predicted Functional Partners:
CN09_29100
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
 
          0.959
CN09_29090
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
 
          0.830
CN09_29095
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
     
  0.801
CN09_23470
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
          0.799
CN09_06410
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
          0.793
CN09_03315
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
          0.687
CN09_29080
Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
          0.650
CN09_06420
Beta-xylosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 43 family (536 aa)
 
     
  0.647
CN09_26190
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (643 aa)
 
          0.645
CN09_03320
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
          0.640
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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