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CN09_29125 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29125" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29125ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (356 aa)    
Predicted Functional Partners:
CN09_29130
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
     
  0.990
CN09_29135
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
     
  0.987
CN09_29140
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (95 aa)
 
          0.983
CN09_29145
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (576 aa)
 
     
  0.965
CN09_29120
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (360 aa)
 
       
0.958
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
              0.697
CN09_21150
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
         
  0.622
CN09_22825
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
     
  0.489
CN09_32040
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
     
  0.488
CN09_09945
Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
   
        0.421
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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