STRINGSTRING
CN09_29135 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29135" - Sugar ABC transporter permease in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29135Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)    
Predicted Functional Partners:
CN09_29130
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
 
  0.989
CN09_29140
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (95 aa)
 
          0.988
CN09_29125
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (356 aa)
 
     
  0.987
CN09_29120
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (360 aa)
 
     
  0.982
CN09_29145
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (576 aa)
 
 
 
  0.973
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
              0.697
CN09_32050
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (477 aa)
 
 
 
  0.519
CN09_32045
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
 
  0.511
CN09_18345
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
  0.510
CN09_30025
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
 
  0.507
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]