STRINGSTRING
CN09_29185 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29185" - Mandelate racemase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_29185Mandelate racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)    
Predicted Functional Partners:
CN09_32850
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
          0.999
CN09_32855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
   
  0.999
CN09_29190
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
        0.952
CN09_32860
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
        0.821
CN09_29180
4,5-dihydroxyphthalate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (421 aa)
 
        0.738
CN09_29195
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
          0.680
CN09_04435
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
          0.630
CN09_17200
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
   
          0.604
CN09_29690
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (247 aa)
 
          0.595
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
   
          0.567
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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