STRINGSTRING
CN09_29200 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29200" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29200ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (427 aa)    
Predicted Functional Partners:
CN09_29205
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (322 aa)
 
 
  0.990
CN09_29210
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
 
 
  0.972
CN09_29220
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
 
     
  0.966
CN09_29215
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
     
  0.960
CN09_29180
4,5-dihydroxyphthalate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (421 aa)
 
     
  0.908
CN09_29190
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
     
  0.713
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
     
  0.700
CN09_29165
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (618 aa)
 
          0.655
CN09_29195
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
          0.655
CN09_29225
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (359 aa)
     
 
  0.618
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]