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CN09_29320 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29320" - Aminotransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29320Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)    
Predicted Functional Partners:
CN09_20100
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
              0.999
CN09_29325
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family (385 aa)
 
   
  0.979
CN09_29315
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (257 aa)
 
     
  0.944
CN09_04755
Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
     
  0.908
CN09_29330
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
 
          0.862
CN09_04760
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
     
  0.827
CN09_04765
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
     
  0.782
CN09_04780
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
 
          0.772
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling (307 aa)
            0.753
CN09_05195
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (427 aa)
         
  0.751
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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