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CN09_29330 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29330" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29330Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)    
Predicted Functional Partners:
CN09_29325
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family (385 aa)
 
          0.919
CN09_29320
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
          0.862
CN09_29315
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (257 aa)
 
          0.838
CN09_22785
Aryldialkylphosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
              0.652
CN09_15770
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
              0.652
CN09_29310
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (341 aa)
 
          0.578
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (321 aa)
              0.571
CN09_16265
Sodium-solute symporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family (491 aa)
 
          0.546
CN09_12955
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.543
CN09_18405
Uridine phosphorylase; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
              0.530
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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