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CN09_29355 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29355" - MarR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_29355MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)    
Predicted Functional Partners:
CN09_29360
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (511 aa)
 
     
  0.718
CN09_29345
Elongation factor 3; Derived by automated computational analysis using gene prediction method- Protein Homology (609 aa)
         
  0.662
CN09_29350
Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
              0.659
CN09_17880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (77 aa)
   
          0.597
CN09_14780
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
   
          0.550
CN09_27500
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.541
CN09_04180
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
          0.538
CN09_04870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.532
CN09_03555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
   
          0.522
CN09_08380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
   
          0.509
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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